Ë
    µŒjZ  ã                   ó¢   — d dl Z d dlZd dlZd dlZd dlZd dlZd dlmZm	Z	m
Z
mZ d dlmZ d dlmZmZ  ej"                  e«      Z G d„ de«      Zy)é    N)ÚAnyÚDictÚIteratorÚList)ÚDocument)Ú	BaseModelÚmodel_validatorc                   ól  — e Zd ZU dZeed<   dZeed<   dZeed<   dZ	e
ed<   d	Zeed
<   dZe
ed<   dZe
ed<   dZe
ed<   dZeed<   dZeed<    ed¬«      ededefd„«       «       Zdedefd„Zdedee   fd„Zdedee   fd„Zdedefd„Zdedee   fd „Zdedee   fd!„Zd"ed#edefd$„Z d"ed%edefd&„Z!y')(ÚPubMedAPIWrappera`  
    Wrapper around PubMed API.

    This wrapper will use the PubMed API to conduct searches and fetch
    document summaries. By default, it will return the document summaries
    of the top-k results of an input search.

    Parameters:
        top_k_results: number of the top-scored document used for the PubMed tool
        MAX_QUERY_LENGTH: maximum length of the query.
          Default is 300 characters.
        doc_content_chars_max: maximum length of the document content.
          Content will be truncated if it exceeds this length.
          Default is 2000 characters.
        max_retry: maximum number of retries for a request. Default is 5.
        sleep_time: time to wait between retries.
          Default is 0.2 seconds.
        email: email address to be used for the PubMed API.
        api_key: API key to be used for the PubMed API.
    Úparsez;https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?Úbase_url_esearchz:https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?Úbase_url_efetché   Ú	max_retrygš™™™™™É?Ú
sleep_timeé   Útop_k_resultsi,  ÚMAX_QUERY_LENGTHiÐ  Údoc_content_chars_maxzyour_email@example.comÚemailÚ Úapi_keyÚbefore)ÚmodeÚvaluesÚreturnc                 ó^   — 	 ddl }|j                  |d<   |S # t        $ r t        d«      ‚w xY w)z7Validate that the python package exists in environment.r   Nr   zZCould not import xmltodict python package. Please install it with `pip install xmltodict`.)Ú	xmltodictr   ÚImportError)Úclsr   r   s      ún/var/www/html/Fitness-lenito-AI-main/venv/lib/python3.12/site-packages/langchain_community/utilities/pubmed.pyÚvalidate_environmentz%PubMedAPIWrapper.validate_environment5   sB   € ð	Ûà'Ÿo™oˆF�7‰Oð ˆøô ò 	ÜðBóð ð	ús   ‚ —,Úqueryc                 ó  — 	 | j                  |d| j                   «      D �cg c]  }d|d   › d|d   › d|d   › d|d	   › �‘Œ }}|rd
j                  |«      d| j                   S dS c c}w # t        $ r}d|› �cY d}~S d}~ww xY w)zá
        Run PubMed search and get the article meta information.
        See https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESearch
        It uses only the most informative fields of article meta information.
        NzPublished: Ú	Publishedz
Title: ÚTitlez
Copyright Information: úCopyright Informationz
Summary::
ÚSummaryz

zNo good PubMed Result was foundzPubMed exception: )Úloadr   Újoinr   Ú	Exception)Úselfr#   ÚresultÚdocsÚexs        r!   ÚrunzPubMedAPIWrapper.runD   sÚ   € ð	-ð #Ÿi™i¨Ð.E°×0EÑ0EÐ(FÔGóñ
 H�Fð	 ˜f [Ñ1Ð2ð 3Ø  ™/Ð*ð +*Ø*0Ð1HÑ*IÐ)Jð KØ$ YÑ/Ð0ò2ð Hð ð ñ ð —‘˜DÓ!Ð"> D×$>Ñ$>Ð?ðð 7ðùòøô ò 	-Ø'¨ tÐ,Õ,ûð	-ús4   ‚ A, ¢!A'Á!A, Á%A, Á'A, Á,	BÁ5A?Á9BÁ?Bc              #   óÚ  K  — | j                   dz   t        t        j                  j	                  |«      h«      z   d| j
                  › d�z   }| j                  dk7  r|d| j                  › �z  }t        j                  j                  |«      }|j                  «       j                  d«      }t        j                  |«      }|d   d   }|d   d	   D ]  }| j                  ||«      –— Œ y
­w)zŽ
        Search PubMed for documents matching the query.
        Return an iterator of dictionaries containing the document metadata.
        zdb=pubmed&term=z&retmode=json&retmax=z&usehistory=yr   ú	&api_key=úutf-8ÚesearchresultÚwebenvÚidlistN)r   ÚstrÚurllibr   Úquoter   r   ÚrequestÚurlopenÚreadÚdecodeÚjsonÚloadsÚretrieve_article)r,   r#   Úurlr-   ÚtextÚ	json_textr5   Úuids           r!   Ú	lazy_loadzPubMedAPIWrapper.lazy_load^   sé   è ø€ ð ×!Ñ!Øñ ä”6—<‘<×%Ñ% eÓ,Ð-Ó.ñ/ð & d×&8Ñ&8Ð%9¸ÐGñHð 	ð �<‰<˜2ÒØ�Y˜tŸ|™|˜nÐ-Ñ-ˆCÜ—‘×'Ñ'¨Ó,ˆØ�{‰{‹}×#Ñ# GÓ,ˆÜ—J‘J˜tÓ$ˆ	à˜?Ñ+¨HÑ5ˆØ˜_Ñ-¨hÔ7ˆCØ×'Ñ'¨¨VÓ4Ó4ñ 8ùs   ‚C)C+c                 ó6   — t        | j                  |«      «      S )z‰
        Search PubMed for documents matching the query.
        Return a list of dictionaries containing the document metadata.
        )ÚlistrE   ©r,   r#   s     r!   r)   zPubMedAPIWrapper.loadt   s   € ô
 �D—N‘N 5Ó)Ó*Ð*ó    Údocc                 ó>   — |j                  d«      }t        ||¬«      S )Nr(   )Úpage_contentÚmetadata)Úpopr   )r,   rJ   Úsummarys      r!   Ú_dict2documentzPubMedAPIWrapper._dict2document{   s   € Ø—'‘'˜)Ó$ˆÜ W°sÔ;Ð;rI   c              #   ó`   K  — | j                  |¬«      D ]  }| j                  |«      –— Œ y ­w©N)r#   )rE   rP   )r,   r#   Úds      r!   Úlazy_load_docszPubMedAPIWrapper.lazy_load_docs   s,   è ø€ Ø—‘ e�Ö,ˆAØ×%Ñ% aÓ(Ó(ñ -ùs   ‚,.c                 ó8   — t        | j                  |¬«      «      S rR   )rG   rT   rH   s     r!   Ú	load_docszPubMedAPIWrapper.load_docsƒ   s   € Ü�D×'Ñ'¨eÐ'Ó4Ó5Ð5rI   rD   r5   c                 ó€  — | j                   dz   |z   dz   |z   }| j                  dk7  r|d| j                  › �z  }d}	 	 t        j                  j	                  |«      }	 |j                  «       j                  d«      }| j                  |«      }| j!                  ||«      S # t        j
                  j                  $ r~}|j                  dk(  rc|| j                  k  rTt        d| j                  d›d	�«       t        j                  | j                  «       | xj                  d
z  c_
        |dz  }n|‚Y d }~nd }~ww xY w�Œ)Nzdb=pubmed&retmode=xml&id=z&webenv=r   r2   r   i­  zToo Many Requests, waiting for z.2fz seconds...é   é   r3   )r   r   r8   r:   r;   ÚerrorÚ	HTTPErrorÚcoder   Úprintr   ÚtimeÚsleepr<   r=   r   Ú_parse_article)	r,   rD   r5   rA   Úretryr-   ÚeÚxml_textÚ	text_dicts	            r!   r@   z!PubMedAPIWrapper.retrieve_article†   sA  € à× Ñ Ø)ñ*àñð ñð ñ	ð 	ð �<‰<˜2ÒØ�Y˜tŸ|™|˜nÐ-Ñ-ˆCàˆØðÜŸ™×/Ñ/°Ó4�Øð —;‘;“=×'Ñ'¨Ó0ˆØ—J‘J˜xÓ(ˆ	Ø×"Ñ" 3¨	Ó2Ð2øô! —<‘<×)Ñ)ò Ø—6‘6˜S’= U¨T¯^©^Ò%;ô ð'Ø'+§¡°sÐ&;¸;ðHôô —J‘J˜tŸ™Ô/Ø—O’O qÑ(•OØ˜Q‘J‘Eà�Gô ûðúñ	 s   ¾B  Â D;Â=A4D6Ä6D;rd   c                 ó¾  — 	 |d   d   d   d   }|j                  di «      j                  dg «      }|D �cg c]  }d	|v rd
|v r|d
   › d|d	   › �‘Œ }}|rdj                  |«      nIt        |t        «      r|n7t        |t
        «      r&dj                  d„ |j                  «       D «       «      nd}|j                  di «      }dj                  |j                  dd«      |j                  dd«      |j                  dd«      g«      }	||j                  dd«      |	|j                  di «      j                  dd«      |dœS # t         $ r |d   d   d   }Y �ŒFw xY wc c}w )NÚPubmedArticleSetÚPubmedArticleÚMedlineCitationÚArticleÚPubmedBookArticleÚBookDocumentÚAbstractÚAbstractTextz#textz@Labelz: Ú
c              3   ó2   K  — | ]  }t        |«      –— Œ y ­w)N)r7   )Ú.0Úvalues     r!   Ú	<genexpr>z2PubMedAPIWrapper._parse_article.<locals>.<genexpr>¼   s   è ø€ ÐMÑ6L¨Uœc %ŸjÑ6Lùs   ‚zNo abstract availableÚArticleDateÚ-ÚYearr   ÚMonthÚDayÚArticleTitleÚCopyrightInformation)rD   r&   r%   r'   r(   )ÚKeyErrorÚgetr*   Ú
isinstancer7   Údictr   )
r,   rD   rd   ÚarÚabstract_textÚtxtÚ	summariesrO   Úa_dÚpub_dates
             r!   r`   zPubMedAPIWrapper._parse_article¨   s›  € ð	TØÐ-Ñ.¨Ñ?Ð@QÑRØñˆBð
 Ÿ™˜z¨2Ó.×2Ñ2°>À2ÓFˆñ %ó
á$�Ø˜#‰~ (¨c¡/ð �8‰}ˆo˜R  G¡˜~Ò.Ø$ð 	ð 
ñ ð �I‰I�iÔ ô ˜m¬SÔ1ñ ô " -´Ô6ð —I‘IÑM°m×6JÑ6JÔ6LÓMÔMà0ð 	ð �f‰f�] BÓ'ˆØ—8‘8à—‘˜ Ó#Ø—‘˜ Ó$Ø—‘˜˜rÓ"ðó
ˆð Ø—V‘V˜N¨BÓ/Ø!Ø%'§V¡V¨J¸Ó%;×%?Ñ%?Ø&¨ó&ð ñ
ð 	
øô= ò 	TØÐ-Ñ.Ð/BÑCÀNÑS‹Bð	Tüò
s   ‚D? ¶EÄ?EÅEN)"Ú__name__Ú
__module__Ú__qualname__Ú__doc__r   Ú__annotations__r   r7   r   r   Úintr   Úfloatr   r   r   r   r   r	   Úclassmethodr   r"   r0   r   r}   rE   r   r)   r   rP   rT   rV   r@   r`   © rI   r!   r   r      s\  … ñð* ƒJð 	Fð �có ð X€O�SÓWØ€IˆsÓØ€J�Óð €M�3ÓØÐ�cÓØ!%Ð˜3Ó%Ø)€Eˆ3Ó)Ø€GˆSÓá˜(Ô#Øð¨$ð °3ò ó ó $ðð-˜ð - ó -ð45˜sð 5 x°¡~ó 5ð,+˜#ð + $ t¡*ó +ð< $ð <¨8ó <ð) Cð )¨H°XÑ,>ó )ð6˜sð 6 t¨H¡~ó 6ð 3 Cð  3°ð  3¸ó  3ðD+
 #ð +
°$ð +
¸4ô +
rI   r   )r>   Úloggingr^   Úurllib.errorr8   Úurllib.parseÚurllib.requestÚtypingr   r   r   r   Úlangchain_core.documentsr   Úpydanticr   r	   Ú	getLoggerr„   Úloggerr   rŒ   rI   r!   Ú<module>r–      sC   ðÛ Û Û Û Û Û ß ,Ó ,å -ß /à	ˆ×	Ñ	˜8Ó	$€ôD
�yõ D
rI   